rs49367946 SNP Detail

Summary

• ID
  rs49367946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19117724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGTAAGA GGGCCACAGA
  AATAGGGTTC AGCCTGCAGT CCCAGTACTC AAAGTAGAGG CAACAGGATT GCCAAAAGTT
  CAAAGCCAGC CAGAGATTCT TAGTAACTAC TAGGCCTGCA TAGCAAGATC CTTTGGGGTA
  GGCGGGTGAG GAATAAGAAT TAACAATTAA AAGTCCAGCA GAAGAGGAGG AGCGGAGACT
  R
  TCAGTCCTGG GGCCTTGACA GCGATGCCAC TGCTGTGTGT GTTGCCTTGC TGTTCCCGGG
  TGGTGGCATG TCAAGGAGAG TTCCCCAGAG CGTACGTTGA TGACAGAGAG CCTGTGTCTT
  ACTACTTCTG TGCCCAATTT TCAGGGTCAT GGAGTCCTGG AGATGCCCTC GGGCACTGGG
  AAGACAGTGT CCCTATTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148474313	ENSMUSSNP6563019	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49367946					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19117724 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2			Intron
				Noncoding-Transcript-Variant
Gm26852	predicted gene, 26852			within coordinates
Rr400148	regulatory region 400148			1710 bp downstream
Rr643124	regulatory region 643124			1749 bp distal
Rr643125	regulatory region 643125			1781 bp distal
Tssr64844	transcription start site region 64844			1747 bp downstream