rs49368239 SNP Detail

Summary

• ID
  rs49368239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59652686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAGATAA GAGGAAGAAA CCTGCACAAA CAAGTCTCCT
  TTTTCTCCCC GTTCCCTACT GTGACACTGC AGGAAAGGAG GGGTAAAGAT ACTCAGCTAT
  Y
  GTAGCACCAG GTTAAGGAAA TGGTAGTCAT CCCCTTGATG CCAATACTGC ACAATTCCTC
  TGCAGAAGTC CCTTCTTTTG TCAATGCAGG GAGAGGTGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61014595	NES16116684	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49368239					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014595	NES16116684	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59652686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	1370 bp proximal
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	726 bp upstream
Rr647544	regulatory region 647544	236 bp proximal
Rr647545	regulatory region 647545	737 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr66968	transcription start site region 66968	751 bp upstream
Tssr66969	transcription start site region 66969	1483 bp upstream
Tssr72702	transcription start site region 72702	45 bp downstream
Tssr72703	transcription start site region 72703	123 bp downstream
Tssr72704	transcription start site region 72704	200 bp downstream
Tssr72705	transcription start site region 72705	226 bp downstream
Tssr72706	transcription start site region 72706	1028 bp downstream