rs49369053 SNP Detail

Summary

• ID
  rs49369053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70731855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTTTG TTTGTTTGTT
  TGTTTGTTTA GTGGCAGGGA CTCTCTATGT AGCTCAGGCT GGCTTTGAGC TCACAGCAAT
  GCCCTTGCCT CAGCCTCCTG AGTGCTAGGA TAAGGAGCAT GAGCAAAGCT ACCTTAGAAA
  CTCTTTCAGG CCCACTGCTC AGTGAAGCTG GCTGCCCCTC AGCTTCCGAG GTTCCACTGC
  Y
  TGGGTGCCAA AGACCCTTGG GCTGCCTTCT CTCATCCCGG CTCAGATAGA TTCCCAGAGT
  CCCTCCCAGA GTGGCTGCCA TTCCTCCGGC CCACTTTCTG CCCTTCACAG GCACGGATAT
  CAGAGCCTAC AAGGACATAT TAGCCAAAAA TAATCCTGCG ACCTACTCCT GAAAATGGGC
  CGGCCCCACC GGCCACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60633387	NES16277715	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49369053					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60633387	NES16277715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70731855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20447	CpG island 20447	687 bp distal
Gm38427	predicted gene, 38427	within coordinates
Rr177423	regulatory region 177423	946 bp proximal
Rr186738	regulatory region 186738	454 bp distal
Tssr2595	transcription start site region 2595	1119 bp downstream
Tssr77724	transcription start site region 77724	1092 bp downstream