rs49369905 SNP Detail

Summary

• ID
  rs49369905
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164790114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG AGGGGCGGGG TCACTGATTC
  M
  GTTTTACTGC CTCTTTAAAA TCTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148233550	ENSMUSSNP313515	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320607188	CHEV_2_164773694	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49369905					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164790114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	894 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	23 bp distal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	within coordinates
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	1119 bp downstream
Tssr21689	transcription start site region 21689	446 bp downstream
Tssr21690	transcription start site region 21690	37 bp upstream