rs49371981 SNP Detail

Summary

• ID
  rs49371981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5915744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGTGCTATG TTGGGTTGCA CCTCTTTCTT TGTCATGTAA
  GTGCAGGCTC AGGACAGACA CTCCTTGGGC AGCCTGAAGT TTGCTGATGT TGACAGTGGT
  R
  TTTTGAAGCC TCAGAGTGAG CAAAAGTCTT GGGCTAGTGG GCATTTACTG TGAATACAGC
  CACAAAAACA AGGGCTTTCT TAACACAGTG CTACTACTTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52612668	NES15506748	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49371981					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52612668	NES15506748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5915744 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr403559	regulatory region 403559	904 bp downstream
Tssr118246	transcription start site region 118246	1919 bp downstream
Tssr118247	transcription start site region 118247	1849 bp downstream
Tssr118248	transcription start site region 118248	1248 bp downstream
Tssr118249	transcription start site region 118249	1043 bp downstream
Tssr118250	transcription start site region 118250	977 bp downstream
Tssr118251	transcription start site region 118251	942 bp downstream
Tssr118252	transcription start site region 118252	884 bp downstream
Tssr118253	transcription start site region 118253	665 bp upstream
Tssr118254	transcription start site region 118254	692 bp upstream
Tssr118255	transcription start site region 118255	1822 bp upstream
Tssr118256	transcription start site region 118256	1868 bp upstream
Tssr118257	transcription start site region 118257	1950 bp upstream
Tssr118258	transcription start site region 118258	1992 bp upstream
Tssr121319	transcription start site region 121319	1431 bp upstream
Tssr121320	transcription start site region 121320	1394 bp upstream
Tssr121321	transcription start site region 121321	1383 bp upstream
Tssr121322	transcription start site region 121322	1342 bp upstream