rs49372017 SNP Detail

Summary

• ID
  rs49372017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151997031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGGCTA ACGCTAAGGC
  TAGCACTACT GCACCAGCAG AGTCTCCAGT GGGGAACCTG GCAGTTCTGG TCTCCGGGGC
  ATTCACACTC ATATGTGCAT TCCCACACTT CATTAAAAAT AACATCTTTG GCCAGGCGGT
  GGTGGCGCAC GCCTTTAATC CCAGCACTTG GGAGGCAGAG ACAGGCGGAT TTCTGAGTTC
  R
  AGGCCAGCCT GGTCTACAGA GTAAGTTCCA GGACAGTCAG GGCTACACAG AGAAACCCTG
  TCTGGAAAAA CCAAAACCAA CCAAACAAAA AAACATCTTT TGCAAATAAT TCAGTTGTTA
  AATCCAACTA CTTAATCTAC CAGGTGTGCA AAAATGTAGA GTAACCGAGG AGGGTTTTAC
  TATCCAAAGG ACACTTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136101822	ENSMUSSNP1499084	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49372017					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151997031 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Tssr32405	transcription start site region 32405	1063 bp downstream