rs49372291 SNP Detail

Summary

• ID
  rs49372291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45313260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA CCATTGATGC TGCCTGAACT
  Y
  CCCTAGTGCC TGGCTTGGGG AATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136411186	ENSMUSSNP5817224	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322943291	CHEV_9_45210045	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49372291					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45313260 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	within coordinates
Rr200381	regulatory region 200381	60 bp distal
Tssr84783	transcription start site region 84783	603 bp upstream
Tssr84784	transcription start site region 84784	653 bp upstream
Tssr84785	transcription start site region 84785	1180 bp upstream
Tssr84786	transcription start site region 84786	1212 bp upstream
Tssr84787	transcription start site region 84787	1234 bp upstream
Tssr84788	transcription start site region 84788	1265 bp upstream
Tssr84789	transcription start site region 84789	1291 bp upstream