rs49372707 SNP Detail

Summary

• ID
  rs49372707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34725705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTAATTTC TGTTGCTGGA GTTTTAAATG TTTTTGCTGA
  AAATTTTAAC TGAATGCTGT ATTATGATAG TTTTGTCTGC CAAAGTTTCT GGCTGTTCAT
  Y
  GAATGTAAGA GAGCCAATTT TCTATTCAAA TATCTGCTGC CCACTTCCTT TAACTGTTTA
  GTTGGGAGAC AAAACTATGA CTATGTCGGT CAGCTTTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60591663	NES16317546	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	T	T		T	T		T
ss322576434	CHEV_8_35321605	CHEVERUD	SCREENING_POP	f	SNP									C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49372707					SNP	T	C	C	C	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60591663	NES16317546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34725705 () rs orientation: forward

Symbol	Name	Function Class
Gm63978	predicted gene, 63978	within coordinates
Gm63981	predicted gene, 63981	1187 bp downstream
Tssr80908	transcription start site region 80908	1977 bp downstream