rs49373585 SNP Detail

Summary

• ID
  rs49373585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17815544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA AGCCAAAAGT CTGTCGCCTG
  Y
  TGACTTGGGA GATCAGCCAT TCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146130708	ENSMUSSNP620874	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss325730793	CHEV_19_17912670	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49373585					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17815544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	1910 bp distal
Cpgi10666	CpG island 10666	315 bp distal
Pcsk5	proprotein convertase subtilisin/kexin type 5	548 bp upstream
Rr544885	regulatory region 544885	559 bp distal
Rr544886	regulatory region 544886	583 bp distal
Rr544887	regulatory region 544887	58 bp distal
Tssr158513	transcription start site region 158513	538 bp upstream