rs49375014 SNP Detail

Summary

• ID
  rs49375014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91634209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCCTGC TCAACCGAAT
  AGGGCTTGAG CCCTAACCTC TGGCACAGCC CTGCGGACTG AGCAGCAGCT GTCTGAATCT
  GAGTGGCTTA TGAGAGAGTA GAATAGGACA CGAGAGAGCA GCAGATGCCC CCTTAGTATC
  CATTCGGAAG CGTTTGTCTA CCAGCTCACA GCAAGACTCA TCTTAACCAG CATGGGATAC
  Y
  CATCTGCACG TGTTGAGAAC TGAAGCTAGC AGCAGGTATC AAGTCATTCA GAGGGAGCCA
  GCCTAGTGAG GTAGGACCAA AATAGCACAG CTTTCTCGGT ACAGGAGGGT TCTTCCTCGG
  AGGCTCAAGT GCACCTAAGA TTTTAATATA GATAGCAGCA GCATTGGCGT GGTGCACCTA
  TGATAGCATA GCAGGCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss61672036	NES17617435	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs49375014					SNP	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61672036	NES17617435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91634209 () rs orientation: forward

Symbol	Name	Function Class
Gm51993	predicted gene, 51993	within coordinates
Gm59627	predicted gene, 59627	within coordinates
Rr470642	regulatory region 470642	214 bp proximal
Rr470643	regulatory region 470643	443 bp proximal
Rr470644	regulatory region 470644	854 bp proximal
Ston2	stonin 2	within coordinates
Tssr114594	transcription start site region 114594	418 bp downstream
Tssr114595	transcription start site region 114595	1349 bp upstream