rs49375137 SNP Detail

Summary

• ID
  rs49375137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83982247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATACTAG GGACAGAGAG
  GTACAACTTT CCTGCTGTTA CATAAAGTAG AGACAAAGGT TATCTAGCTG GTGTTGCTTG
  TAAACCAAAA AGATCCTAAG AGCAAGCATG GGATGCAAGC TCTCAGGAGA GCAGAGCTAA
  GTCCAAGTAT CATAAACACC ATGGACCAAA CTAATGTGGT GCATCTTTAA AACCATGAGT
  Y
  CCAGGATTTC AGTGTTTCAA GTTCCAGTAG AGATAGGCTT AGGATATAAA TGTATATACA
  GACAGACAGA CAGACAGACA GATGGGGGAA CGACACTATT TTGAACTGTG TGTAATAACT
  GCATAGAAGT CATTTTCCAG AAAGGAAATA TAACCAGAAT ACAGAATATA TCTTGGGAAA
  TTTATGAATT ATAAAACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61663097	NES17611107	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49375137					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61663097	NES17611107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83982247 () rs orientation: forward

Symbol	Name	Function Class
Gm31386	predicted gene, 31386	500 bp downstream
Gm60518	predicted gene, 60518	1758 bp downstream
Rr469521	regulatory region 469521	660 bp distal
Rr469522	regulatory region 469522	1824 bp proximal