rs49375398 SNP Detail

Summary

• ID
  rs49375398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77498367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCCGCC TGCCTCTGCC
  TCCCAAGTGC TGGGATTAAA GGCATGAGCC ACCATGCCCG GCAATTCCTG ACTTCTTTAA
  ATCAAAGATG GAAAACTCTT CCCTAAGAGA CAAAACTTGC TAAGTATGAT GCTGCTTTTA
  CCAGGAAACC AACATAGGAT TTATGTCGCA TCCCACTCTG CCCAGATACT TGGAGACAGG
  Y
  GTGAGCATTG TTTCTAAAAT TCTGCTCAGT CAAATAGCAA CATGACAACG GCTGCAGAGA
  TCTGTGTCCA GATGTCAAAA CTTAATAAAG TAAGAAAAGC CTTATATTTC TGGCCATTAT
  TCTGTTTCTG AGAGCTGTTT TTCTTTCTAA GTTTTCCTCT CCTTTCAAAG CTTAGCTTTT
  TAAAGGATGC CTAGAAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61429611	NES16809150	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49375398					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429611	NES16809150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77498367 () rs orientation: forward

Symbol	Name	Function Class
Rr368830	regulatory region 368830	1446 bp upstream
Rr683375	regulatory region 683375	1349 bp proximal