rs49375935 SNP Detail

Summary

• ID
  rs49375935
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148516345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATCTTCC GGAATCTCCC
  TGAGACTGTT TGAATGCTAG AGCCTTTCTG CTATGGTGTC ATGGCCCTGC TGGTCTTAAA
  TGGTGGCCAT TAATGCTGAA GACATAAATT CTAGTTAGTC TTGGGTTTAC TTGTTATGGG
  CATTGTAACC ACTGTCCTCC ACTCTCCTGA GAAATATGCC ATTCCCTGCA TCTTCTGGGT
  C
  CTTGTTGGAT TATTTCATGG TAGTCTTTTC CCATACAGGC ACCTGCTCTC CTTTGTTGGG
  TCAGTAACCA CTCACTTCTA CAGCGGGAGA CACAGGTTTT ACTAAGATGA GCCACACCCT
  GGTTGCCTAG GGGCAGTCAC ACCTATCCAC GCTTTTAGGA AAGCAGACTT CAGGTATCAA
  ATGTACTTTA ATAATTATAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147930980	ENSMUSSNP5775795	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49375935					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148516345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	1357 bp distal
Gm75182	predicted gene, 75182	172 bp downstream
Nxt1	NTF2-related export protein 1	within coordinates
Rr397374	regulatory region 397374	1737 bp downstream
Rr566945	regulatory region 566945	1789 bp distal
Rr566946	regulatory region 566946	1919 bp distal
Rr566947	regulatory region 566947	578 bp distal
Tssr20647	transcription start site region 20647	1703 bp downstream