rs49375959 SNP Detail

Summary

• ID
  rs49375959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76040464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAACACGC ATGAGCCAGG
  AGCCCTTGAG TTTGTTGGAA CAAGAGCCTT TGCTACCCTC TGCTGGACGC GTCTCATAAC
  AGCGCCTGGC TGCTTTGTTA AAATACACAC ATGAAGTCAT GAAACAACTA AGGGAGAAGT
  CAGTGACACA ACAGTGCATC TCAGAGGTGG CTCTGCGACT CCGCGACTCT GAGACTCTGC
  R
  GCTCTGCGGC TCCTCAGCCC AGGGGTCCTT GCTGGAGCAG CTCTGAGCTG GCCTCCAAGA
  CAGAAGAAAG GTCAGGCCAG GGGAGAAATT TGAAGTGCTT TTAGCATATA TCCCGATCTG
  TCTCTTGCAA CCCCTGTCCT CAAGGAGGGC CAGGCAGGGC CTCAACTGGT GAGATGTGAG
  GGTGAAGACA GGGGCCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss63566462	NES16968262	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49375959					SNP	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63566462	NES16968262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76040464 () rs orientation: forward

Symbol	Name	Function Class
Gm62598	predicted gene, 62598	184 bp upstream
Rr390932	regulatory region 390932	1465 bp upstream