rs49377169 SNP Detail

Summary

• ID
  rs49377169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79626142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATTCTTGC AGGAGATTTT GGATGTGGAG GTGATAATTT
  CAAAGCATTC ATTAAAATAT ATTTAAAATG AATTTTCTTG ATTGGCTCTG GGAAGATTAC
  Y
  AAATGGTTAG AAGATAAAAG TAACAGAAAA AATATTGAAC CATATGAATA AATTAAATAG
  CTATGTGGCC AAACCTGGTG GCTCGTTCCC TATAATCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139812859	ENSMUSSNP5701610	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324677529	CHEV_14_79788509	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49377169					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79626142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6774	CpG island 6774	1391 bp proximal
Naa16	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	within coordinates
Rr404230	regulatory region 404230	1944 bp upstream
Rr496090	regulatory region 496090	817 bp proximal
Tssr129900	transcription start site region 129900	715 bp downstream
Tssr129901	transcription start site region 129901	1937 bp downstream
Tssr129902	transcription start site region 129902	1964 bp downstream