rs49377309 SNP Detail

Summary

• ID
  rs49377309
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61901523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGTTTG CTCCAGCTAG
  TCACTTGGTC TCAGCTTGGA TTCCTCCAGG GACAGGAGGC TCTCTGGTCC CAGGGACAGC
  TGATTCATTC TGGCAAATTC TGGTAGAAAA GACTTCCCCA TGTGAAGTAA CAACCTGGTA
  CCCTGGAGGT TCACCACAGT CCACACATCA CTGAGCATCT GGGATACCTG CTATGACTGT
  K
  GCTGGGCTTG GGGAGCACAG TGAGCCAGGT AGACAGGGCT AATGTCATCT TCTGGAAGGG
  ATGACAGACA GGAAAGAAAT AGTGGTCATA ACTGTGTGAA GGTCCCTGAA GGTCCCATGT
  GCGTGTATGC GTGCGTGTGT GCGTGCGTGC GTGCGTGCGT GCGTGCGTGC GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ
ss61280108	NES16886537	PERLEGEN	MM_PANEL2	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ
rs49377309					SNP	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280108	NES16886537	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61901523 () rs orientation: forward

Symbol	Name	Function Class
D10Mit149	DNA segment, Chr 10, Massachusetts Institute of Technology 149	1384 bp proximal
Tssr93687	transcription start site region 93687	871 bp upstream