rs49377474 SNP Detail

Summary

• ID
  rs49377474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:39907681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT GGTGGCTTGA GACTACCCCA
  Y
  CTGGGTGTCC ATCCGATAAT CAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss144611508	ENSMUSSNP1640671	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss322623098	CHEV_8_40539994	CHEVERUD	SCREENING_POP	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs49377474					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:39907681 () rs orientation: forward

Symbol	Name	Function Class
Gm5609	predicted gene 5609	1270 bp upstream
Rr1558	regulatory region 1558	591 bp proximal