rs49377553 SNP Detail

Summary

• ID
  rs49377553
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20788455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCAGCA AGAAACAAAA
  CAGTTGTCAG CATGGAATCC TAAATAGGGC AGCTTAACAG GTGAATAAGC AGCATCCAAT
  ATGCAGGCCA TTTTCTGAGA TCTTGGCTCT TTCTCCAGCT GCTAATGGTT CTCTTTTGAA
  GTTAGAGCAG AACTCTACTG TCTGAAGAGG AATCTGCAAA GAACAATGTA GGTTTTCTGA
  K
  AAATGGCATA TGGTTCCTTC TCCCCCAAAG TTCACAGTCA ACTGAACAGA CAAAGACTAT
  TATTTGTTTT ATAAAGAAAA CAAAAATGCT TAATAATGTA GTCCAGTGTG TTTTCCAAAA
  GAAATGATGG GGTGATGTCC CCAGGAATAG ATTACTAGAA GCCCTGGGTA TTAGAGACCT
  GGACACAGGA GGTTCAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61757686	NES17682690	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49377553					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757686	NES17682690	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20788455 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	within coordinates
Tssr118599	transcription start site region 118599	1109 bp upstream
Tssr118600	transcription start site region 118600	1152 bp upstream