rs49378464 SNP Detail

Summary

• ID
  rs49378464
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40902282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCATGTGC TGCCAATATC ACCTCAGATC AAATTTCAAT
  GCTAAAAAGA AAGAACTTGC TAGGCTTCCC AAAATGTTAT CTATCTGTAC TGTGTCACTA
  M
  CCATCACTGG GGAGCAACAG TGGGAACATA GTTAAACTGT GATCCAGTGC AATTCCTACA
  GATTAAAGCC TGGGAAATTA ACTGGGAGTG ATGGCTCCCC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60400023	NES15889947	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49378464					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400023	NES15889947	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40902282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	1284 bp proximal
Gm64655	predicted gene, 64655	1149 bp downstream
Larp1b	La ribonucleoprotein 1B	1981 bp upstream
Rr397652	regulatory region 397652	1665 bp upstream
Rr575871	regulatory region 575871	791 bp proximal
Rr575872	regulatory region 575872	1668 bp proximal
Tssr28976	transcription start site region 28976	1934 bp upstream
Tssr28977	transcription start site region 28977	1971 bp upstream