rs49378697 SNP Detail

Summary

• ID
  rs49378697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122631691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATGACC AGGTCCTGTG
  GAGTTTGTAT ATGGATCTCT TTAAAAGAGG AACACATTCT GCACAGCACA AAAGGGGACT
  TCCTGTGCTA CAGTTGCCAT TAGCTATGTG TCAACTAGGT TTGAACGAGT AATTTGGCAG
  GGACTGTGCT ATAGAGATGA GTAATATATA GAAAAGGATA ATCGTGGCTT GTGGCTAAGT
  Y
  GGACCTCCAG CCTGGGGAAG GAAGAATGAT TGCTCAAGTC ATATCAATCT GTAGCTTCTC
  CCCTCTGCAG TGGGAAGAAA CAAATCATGT AGTTCTTATG TACTAGGTGT TCAGGTGGGT
  GGACCTACCA GCATCTCTAC CTGGAGGCAA ATTCCAAACT CCCCATAGCC TTGCTGTGCA
  CAGGCTCACT TTCCTGGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60938538	NES16184721	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49378697					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938538	NES16184721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122631691 () rs orientation: forward

Symbol	Name	Function Class
Rr638242	regulatory region 638242	within coordinates
Tssr58692	transcription start site region 58692	102 bp downstream
Tssr62939	transcription start site region 62939	345 bp upstream