rs49379842 SNP Detail

Summary

• ID
  rs49379842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58885137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGGATC CCACCTTAAC
  CAGGACTGCT GAGTCATGCA CACCACAAAA CCCTAAAGTT TTGTCCATAC CCATATGAAG
  AAAAGTTCCC ACGAAGAGAA ATAGTGAAGT AAAACCAGAA GCTAACAAGT ATGAGAGATG
  TATTTAATTT GATGCTCCTA ACAACAATTT CCGGGTTTGG GGGCATACAT AATTCAGGAC
  Y
  TGAGAGGTGG AGGTCACTAG ACTTCTTTAT TTGTTCTTTG CATTATGGCC ACTGAGTAAA
  TCTTCTTTCT CTGCTTTTCA CTGTTATTTT TCTCTTTAAT TGGCCTGTTG AAGACAGGTG
  GCTAATCCTC GCTTGTTGGT GCTGCTAGGG TCAGGCTCTG ATCCTGACAA CTGTGGTCAC
  AGTACTGCAA TTAATAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61407222	NES16791468	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49379842					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61407222	NES16791468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58885137 () rs orientation: forward

Symbol	Name	Function Class
Gm47271	predicted gene, 47271	within coordinates
Neo1	neogenin	within coordinates
Rr383441	regulatory region 383441	273 bp upstream
Rr680057	regulatory region 680057	1260 bp proximal
Tssr89922	transcription start site region 89922	1281 bp downstream