rs49379883 SNP Detail

Summary

• ID
  rs49379883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:18993062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACTCTG CTCCCGCCCC
  ATCAGAGTCT GAAAACGTGA CAAGCACAGC CCAAAGGGAA GTTCCCCTCT TGTCATTTTT
  TTGTCAACAT CTCTATAAGT GTTTCATAGT TTTGGCTCTG TGATAGACTT CAAACAAATC
  CAAAGATACT CCTTGTCCTC AGGCAAGTAG TATAACATCA AAAACACGAC AGAGAGCACA
  Y
  GCGTATTTCT TCCGTGCTGA GTGGAAGGCA GTAATCTGTG GACGTACAAT GCTTGCTAGT
  GGTAAGGCAG GTGTTTACCA TGCTACAAGC ATGACACAGA AACCATCAGA AGGGCTTTTC
  ATTTTAATTT GAAACATCTG AACAGAGGCA CGGCTATTGC TAATCCTCAA ATTAAACAAC
  AGGCTTTTTC CAGAGTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61253812	NES16864015	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49379883					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61253812	NES16864015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:18993062 () rs orientation: forward

Symbol	Name	Function Class
Gm67464	predicted gene, 67464	within coordinates
Rr226792	regulatory region 226792	within coordinates
Tssr92530	transcription start site region 92530	115 bp upstream
Tssr96897	transcription start site region 96897	254 bp upstream
Tssr96898	transcription start site region 96898	236 bp upstream
Tssr96899	transcription start site region 96899	208 bp upstream