rs49380197 SNP Detail

Summary

• ID
  rs49380197
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122808158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACAACC TCTGCTTTCA
  TCCCTGAAGG GTTGAAAAAA ATAAATAAAC CTTATAAATT AAGGTTCTCC ACTTAATTTA
  TAAGGATGCC TGCTTAATCA TGGGATGTAG GACCTCCAGG AATCTCATCT TGAGAGTTTT
  ATTTACATGT GCAAAAACTC TGTTTCCAAA TAAGGTCATC ATTGTGGTGC TGGCCTGGGG
  K
  TGGGGGGTGA CTTGAGCCTA TCTTCTTTCG GGGAGGACAT TATTTAATCC ATTATGTGAA
  GAAAAGCACC TTGTCCAGTG CCCCTCACCA ACTCACCACC TGCCTGTACC AAGGTGGAGC
  TACTCAGACC TTCCGAAACC CCTCTTTGGC ACTCATTCAG GTCCAGAGGC CCCTTTTTTG
  AATAGCCTTC CCCCACATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149189128	ENSMUSSNP3847883	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss321669306	CHEV_5_123120104	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49380197					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122808158 () rs orientation: forward

Symbol	Name	Function Class
Gm71511	predicted gene, 71511	within coordinates
P2rx7	purinergic receptor P2X, ligand-gated ion channel, 7	within coordinates
Rr619940	regulatory region 619940	1659 bp proximal
Rr619941	regulatory region 619941	1736 bp proximal