rs49380303 SNP Detail

Summary

• ID
  rs49380303
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153138720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAGGAA GAGCCCAGCA
  TTAGACCAGG AAAACCTCAG GACACCAGAC ACACTAATGG CCCCGTAGGC TCGTCTAAGC
  CTGGAAATTG CCCATTTCCC CACAAGTGGT TCTTAACATA GGCCATGAAA ACTTGTATAA
  GTGCGGTACT AATACATTTT AAAATAAAAC CAAATAATGA GCTCACCTAT TCTTACTCCT
  S
  GGGCTTCATT GAACGCTTAA TTAAAATATC TTTTCTTAGA AATCTGAAAG CTTTTGGAAT
  GGGTCCTCTG GGGACGTCCA GTACATTCAA AGCCTTTCCC TTTATTAACT AGAGTGCTTC
  TCTTGGTGCA CTGTCCTCAG AACGGTTATC TACCCTGGGG AGAAGGAGGC TGTTTGGGAC
  ATGAACAGGA AAGGAGAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60821901	NES16491793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49380303					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60821901	NES16491793	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153138720 () rs orientation: forward

Symbol	Name	Function Class
Lamc1	laminin, gamma 1	within coordinates
Rr19803	regulatory region 19803	120 bp distal
Rr31194	regulatory region 31194	82 bp proximal
Tssr14256	transcription start site region 14256	489 bp upstream