rs49380469 SNP Detail

Summary

• ID
  rs49380469
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93872901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG CACTTTGGCT CATTGTGTTG
  C
  GACCTTTTTA AGGAACAGTT TCTAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323407278	CHEV_10_93499784	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49380469					SNP	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147378641	ENSMUSSNP2591084	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93872901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	251 bp distal
Fgd6	FYVE, RhoGEF and PH domain containing 6	within coordinates
Gm49628	predicted gene, 49628	1238 bp upstream
Rr402165	regulatory region 402165	1023 bp downstream
Tssr3327	transcription start site region 3327	664 bp downstream
Tssr95293	transcription start site region 95293	1568 bp downstream
Tssr95294	transcription start site region 95294	984 bp downstream
Tssr95295	transcription start site region 95295	918 bp downstream
Tssr95296	transcription start site region 95296	58 bp downstream
Tssr98985	transcription start site region 98985	1270 bp upstream
Tssr98986	transcription start site region 98986	1252 bp upstream
Tssr98987	transcription start site region 98987	1223 bp upstream
Tssr98988	transcription start site region 98988	290 bp upstream
Vezt	vezatin, adherens junctions transmembrane protein	1240 bp upstream