rs49380656 SNP Detail

Summary

• ID
  rs49380656
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77282377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA CATGATCTAA GCTTTCTGCT
  A
  TACAAAAGCA AAAATATTCT AAATC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144701624	ENSMUSSNP6237813	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324447436	CHEV_13_77273519	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49380656					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77282377 () rs orientation: forward

Symbol	Name	Function Class
2210408I21Rik	RIKEN cDNA 2210408I21 gene	1282 bp upstream
Cpgi5881	CpG island 5881	731 bp proximal
Rr281682	regulatory region 281682	23 bp proximal
Rr284991	regulatory region 284991	1777 bp distal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr120442	transcription start site region 120442	806 bp upstream
Tssr120443	transcription start site region 120443	1255 bp upstream
Tssr123276	transcription start site region 123276	1158 bp downstream
Tssr123277	transcription start site region 123277	1239 bp downstream