rs49382059 SNP Detail

Summary

• ID
  rs49382059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97241136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGCGAT TGCTTGCTGT
  GGGAGGCCCC ACACCCTTGG GTGTTACCAC GCCCGGACAG ATGGTCCCTT CCCTGGGTTG
  TGTAAGAAGG CAAGTTGAGT GAGCCACCCA GTGAGTGAGG TTCAGGCACT ATCCTCACCA
  GGACAGACTT CCTGACTCTG CACTAGAGAT AGAGATAGAG ATATATTCAG AGACCGATGG
  Y
  GATTGCGTAA TCTGAGGTGG AGACTTTGCC GACGTGTTCA TAACCTTTAG TCTGTGAATT
  CAAAACAATT TTGTAAAATG CATTTTTTCT AAATTTTATT GGTCCCCCCC CCCCCCCCCC
  CCGCTCTGTG TGCACTGAGG TTTTGCCTGC TGAAAGAACA GGGGGTGCTC TGAGCACTCT
  CTCCAGCCCT ACCTCTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148436621	ENSMUSSNP5178421	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325076716	CHEV_15_97173686	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49382059					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97241136 () rs orientation: forward

Symbol	Name	Function Class
Gm33325	predicted gene, 33325	194 bp upstream
Pced1b	PC-esterase domain containing 1B	Intron
Rr404591	regulatory region 404591	551 bp downstream
Rr508793	regulatory region 508793	205 bp distal
Rr508794	regulatory region 508794	within coordinates
Rr508795	regulatory region 508795	1856 bp proximal