rs49382255 SNP Detail

Summary

• ID
  rs49382255
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:18294556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAGTTG AGACCTCTAT
  GAGAAAGTAC TACCCCTAGT TAAGAACAAA TAGCTATAAA TCTTGTGGAC AAGCACCTAG
  CAACCCATTC TGTTCTTTTT CTCCTGCTGA ACTTTTTACC TAGCCAATAT CCTGCTTTTT
  TAGAACAGGT ACATTCTCCC AGAAACAAAG CGATTCTGTG TCATATCCCC CCCCCCCCCC
  S
  GACCCCCATA CTCTACTTCT GTGGGCAATA AAACCTGCCT GGGAATAATA AAAATTTGAC
  AGCTTGAACA ATCAGACTTG CTGCCTGTCC TTTTGTTTCT CATCCTTCAT TCTCTCCACA
  GTTGGTTCTT CACTCCCTGT TCGACTGTCT TGCGGGCTGG GACAAAGATC CTTTATGATA
  CCTGAGATGA ATCATTCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148689425	ENSMUSSNP3385007	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49382255					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:18294556 () rs orientation: forward

Symbol	Name	Function Class
Defb44-ps	defensin beta 44, pseudogene	768 bp upstream
Gm71262	predicted gene, 71262	663 bp upstream
Tssr11066	transcription start site region 11066	750 bp upstream
Tssr11067	transcription start site region 11067	724 bp upstream