rs49382304 SNP Detail

Summary

• ID
  rs49382304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136346712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCTCTT GTGGGGGATG
  TGGGGGGTGG TAACTTAGGC AGGGGCCAGA GTTCCAGGAG CATGAGGGAA CGCCTACTGT
  GTCATGAAGG TGAATTATCA CCATTCCTGG GGTTCAGACC TCAGCTCAAC TGGAGACCAG
  CCTGTCTGTG CAGAGCCCAA TGCCCCACAA TTTTCCATCT CATTCTCTTT AAGATGGCAT
  Y
  TCTTACTGAC CCTGGAGCTC TGATCAGTGA GATTCCCTGG CCAGTGAGTC CCCAGGACAC
  CGAGCCCACC CCCACCCAGT GTGGGGTTAC ATATCTTCGC TGTCACATCC AGCGTTTAGT
  TTGTTTGCTT GCTTGCTTCT TCTAGCCTGT GGGCTGCAGA GCCAGACTCA GGTGCTCACG
  CTCACCCACA AGCCCTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147572996	ENSMUSSNP3510232	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321356408	CHEV_4_136175316	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49382304					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136346712 () rs orientation: forward

Symbol	Name	Function Class
Rr86434	regulatory region 86434	1689 bp proximal
Rr103033	regulatory region 103033	within coordinates
Rr398615	regulatory region 398615	1924 bp upstream