ACCCAGGTCC TCTGGTGAGA CGTGGCTTTG CCCACTTTAA AGAACCTCCA TGCTCCTGTT CCCATTCATA CCTACATGGT CATCAAGGAG ATGGCTATTG TCACCAGACA GCTGGAAATT AGAGACTCTG AGATGTGGGA ATTAGCCCAA AATCACGGCA TCCCACACAG AGTGGAACCA GAACCAGAAC TGGCTCCTTA Y CATTCTATAA AAGGGGAACC TGGGACCTGG GGACCTGGGG ACTTTCCACT TTGAAACCAT TAACCTGGGG AAAAGGGTGG GTCTAAGAAG ACAGACTGTG GAAGAGGGCT GGGTCAGGAT TCCTTGCCTC TAATTACTCT TAAATTATTT CCAAAAATAT TTAACTGACA AAGACAGGTT ATATCGAAGG CATTTATCAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss61024866 | NES16103417 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | C | T | C | T |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs49383257 | SNP | T | T | T | T | T | T | T | T | T | C | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61024866 | NES16103417 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr7:79583814 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Arpin | actin-related protein 2/3 complex inhibitor | within coordinates | ||||||
Cpgi19319 | CpG island 19319 | 943 bp proximal | ||||||
Gm31966 | predicted gene, 31966 | 1373 bp upstream | ||||||
Rr649743 | regulatory region 649743 | 514 bp proximal | ||||||
Rr649744 | regulatory region 649744 | 1283 bp proximal | ||||||
Tssr73196 | transcription start site region 73196 | 1175 bp downstream | ||||||
Tssr73197 | transcription start site region 73197 | 1192 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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