rs49383449 SNP Detail

Summary

• ID
  rs49383449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTCGACTGAC TTGGACCTCG ATCTGTAGAC CAGGCTAGCC
  TGAAACTCAC AGAGATCCAC CTGTCTCTGC CTCTTGAGTG CTGGAATTAA AGTCATATGT
  Y
  ACCACCACCT GGGAACAGTT TGCTTTGGGT TAAGAGTAAA CCCAAAACCC GGACATGGTG
  GCGCACGCCT TTAATCCCAG CACTCGGGAG GCAGAGGCAG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144651907	ENSMUSSNP33089	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49383449					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	521 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	880 bp upstream
Tssr114	transcription start site region 114	757 bp downstream
Tssr115	transcription start site region 115	773 bp downstream
Tssr116	transcription start site region 116	790 bp downstream
Tssr7298	transcription start site region 7298	852 bp upstream
Tssr12164	transcription start site region 12164	709 bp downstream
Tssr12165	transcription start site region 12165	733 bp downstream