rs49384117 SNP Detail

Summary

• ID
  rs49384117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133856855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC CCCAAGAGTA GACCTGGGGC
  Y
  ACATAAATAA TGGCGCAGGA ACAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147518535	ENSMUSSNP2152120	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321345454	CHEV_4_133685459	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49384117					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133856855 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	314 bp downstream
Cpgi15028	CpG island 15028	424 bp distal
Gm68742	predicted gene, 68742	within coordinates
Rr601575	regulatory region 601575	265 bp distal
Rr601576	regulatory region 601576	57 bp proximal
Rr601577	regulatory region 601577	135 bp proximal
Rr601578	regulatory region 601578	283 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	811 bp upstream
Tssr39535	transcription start site region 39535	1939 bp downstream
Tssr39536	transcription start site region 39536	1829 bp downstream
Tssr39537	transcription start site region 39537	1578 bp downstream
Tssr43866	transcription start site region 43866	1858 bp upstream
Tssr43867	transcription start site region 43867	1824 bp upstream
Tssr43868	transcription start site region 43868	1753 bp upstream
Tssr43869	transcription start site region 43869	1733 bp upstream
Tssr43870	transcription start site region 43870	1571 bp upstream
Tssr43871	transcription start site region 43871	1521 bp upstream
Tssr43872	transcription start site region 43872	1494 bp upstream
Tssr43873	transcription start site region 43873	1468 bp upstream
Tssr43874	transcription start site region 43874	1453 bp upstream
Tssr43875	transcription start site region 43875	844 bp upstream
Tssr43876	transcription start site region 43876	774 bp upstream
Tssr43877	transcription start site region 43877	60 bp downstream