rs49384841 SNP Detail

Summary

• ID
  rs49384841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98947545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACGTTGAA TATTTTGAAG CATCCTAAAT TCCAGGATCC
  TGAAGGCTTA GAGTCAGCCA CTCAAACTAG CACATTAACA GACTGTAGAC GTGCCATTCT
  R
  GCTTCTGACC AGTAGGTGGC AGCAACACCT TTACCTTTCA GAACAACCAA AAAATAGGTG
  GGAGAGGAAA GGAAAGAGGG GGAAACGGAG TTCGGCTACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52581852	NES15643092	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49384841					SNP	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52581852	NES15643092	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98947545 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	1545 bp distal
Gm41399	predicted gene, 41399	within coordinates
Rr305848	regulatory region 305848	within coordinates
Rr315589	regulatory region 315589	within coordinates