rs49386290 SNP Detail

Summary

• ID
  rs49386290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACTGAG GAGAGAGAGC
  GAGGTCCTGG GAGGACAAAG AGAGTCTCCG CAGCCGCCAC AGCTGCCGCC GGAACTCTGG
  GCAAATCCCA GTGGACAGAG TCCAGTTCTC CCACTCCGGA TTCCGGAGAG TTGCTGCAGA
  CAATGAGGCC CGCAGCGACA GCTCTCGGGA CAAGTTCCTC GCCTCCCGCT GAGTCTCCGG
  Y
  GCCCACCCGG GAGCAGAAAG GCTGGCGTCT AGCTGCGGTG GTGAGCTGCG GGACAGGCAC
  CCGCGGACCC CACGATCGCC GCGGGAACTC AGCCGAGTCC TCCTCTTCCG CCTCTCTTCC
  TCGGACCGCC CAACTCCTCG CGGCACTTTA TAACTTTCTT CCCTGCCCCA ACCTGGCGCC
  GCGCCGCGCG GGGCGAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199542	NES16709302	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49386290					SNP	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199542	NES16709302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178786 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	25 bp proximal
Rr615104	regulatory region 615104	2000 bp proximal
Tssr1554	transcription start site region 1554	25 bp downstream
Tssr47433	transcription start site region 47433	203 bp downstream
Tssr47434	transcription start site region 47434	191 bp downstream
Tssr47435	transcription start site region 47435	168 bp upstream
Tssr47436	transcription start site region 47436	337 bp upstream
Tssr47437	transcription start site region 47437	372 bp upstream
Tssr51988	transcription start site region 51988	311 bp upstream
Tssr51989	transcription start site region 51989	300 bp upstream
Tssr51990	transcription start site region 51990	280 bp upstream
Tssr51991	transcription start site region 51991	162 bp upstream
Tssr51992	transcription start site region 51992	107 bp upstream
Tssr51993	transcription start site region 51993	43 bp downstream
Tssr51994	transcription start site region 51994	67 bp downstream
Tssr51995	transcription start site region 51995	210 bp downstream
Tssr51996	transcription start site region 51996	370 bp downstream
Tssr51997	transcription start site region 51997	408 bp downstream
Tssr51998	transcription start site region 51998	448 bp downstream
Tssr51999	transcription start site region 51999	483 bp downstream
Tssr52000	transcription start site region 52000	504 bp downstream
Tssr52001	transcription start site region 52001	524 bp downstream
Tssr52002	transcription start site region 52002	544 bp downstream
Tssr52003	transcription start site region 52003	586 bp downstream