rs49386536 SNP Detail

Summary

• ID
  rs49386536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46248468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGAGATG GTGCCAGCCG
  TCTTTGGATT TTCAGAGAAC TCAAAGGAAC AAAATGTCCT TCCAGGAGGC TTCTGGGACC
  CTAGGCTCTC AGTGGCCTCT GTGGACAGAG GCTATGTCTG TCAGATGTTA TAACTGGCTC
  AGGAGGTGAC CTGTGGCCTA GGAGTCTACT CCATGCTCTG GGCATTGCCC TCCATTTGGG
  Y
  GTGCAAAGCA GCAGGCCCCA CCTTGCATTG TAGAGCATGC CTATGGGAGT GTGGGGTGCA
  CTGGGTGCTT TAAAGAGCTA TGTGGCTCTG TGAGACAGTT AGCAAGAGTT TATTAGTAGT
  ATTCTTTTTA GATAGACCAG GCTGGCCTTG AACTCCTGAC GATCCACCTG CCCCTGCCTT
  CTCAGTGCCA GGATCAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61392175	NES16761227	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49386536					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61392175	NES16761227	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46248468 () rs orientation: forward

Symbol	Name	Function Class
Rr383308	regulatory region 383308	419 bp upstream
Rr678124	regulatory region 678124	271 bp proximal
Rr678125	regulatory region 678125	772 bp proximal