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rs49389486 SNP Detail
Summary
  • ID
    rs49389486
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:71368910 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTTAA CTGGTTTTTA GTGACCAAAG
    R
    CATTCTATAA GGCCTTAAGA ATAAG                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BTBR T<+> Itpr3/J
CAST/EiJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss52444341 NES15422753 PERLEGEN MM_PANEL2 f SNP A A G G G A G A G A
ss137871029 ENSMUSSNP4783349 ENSEMBL ENSEMBL_Sanger f SNP A A
ss324091307 CHEV_12_72423123 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BTBR T<+> Itpr3/J
CAST/EiJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs49389486 SNP A A A G G G A A G A G A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52444341 NES15422753 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:71368910 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930474H06Rik RIKEN cDNA 4930474H06 gene 450 bp upstream
Rr267972 regulatory region 267972 291 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory