rs49390970 SNP Detail

Summary

• ID
  rs49390970
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142944673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC CAGTCTTCTG ACCTGCTCCC
  C
  CAAGGCTGGT CTTAAACTCA AAGCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144594657	ENSMUSSNP4385991	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49390970					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142944673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	1071 bp proximal
Fscn1	fascin actin-bundling protein 1	1437 bp upstream
Rr378736	regulatory region 378736	1279 bp upstream
Rr624073	regulatory region 624073	1397 bp distal
Rr624074	regulatory region 624074	935 bp proximal
Tssr49613	transcription start site region 49613	1430 bp upstream
Tssr49614	transcription start site region 49614	1559 bp upstream