rs49391335 SNP Detail

Summary

• ID
  rs49391335
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TAATTTAAAT GAAAACTAGT ACTCTTATAC ACCCGTGGCT
  CTTGAGGAGT TTGTCGTGCA TAAGGCACAT CCAAAAAACA TTCCTTTGCA AAAAACAAAG
  K
  CTAGGTAGAA GAATTGGAAT GTACCGGTAA AGGTACTGGC CATGATCTTA CTATGGCCCA
  TAAAGGTATA CTTATCCTGG TTTCAATCAT CAGGAGCAGG A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136943665	ENSMUSSNP4738810	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C
ss139867074	ENSMUSSNP1677921	ENSEMBL	ENSEMBL_Sanger	r	SNP	C		C
ss146021722	ENSMUSSNP5040102	ENSEMBL	ENSEMBL_Sanger	r	SNP	A		C
ss147390519	ENSMUSSNP5166679	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss148191940	ENSMUSSNP2000896	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss148802940	ENSMUSSNP1080981	ENSEMBL	ENSEMBL_Sanger	r	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49391335					SNP	G	?	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992508 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	within coordinates
Gm69636	predicted gene, 69636	within coordinates