rs49392236 SNP Detail

Summary

• ID
  rs49392236
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTAGTC CCAGGGAGCT
  TAGGTTGGGG CGGGGAGGGT GTTCTGGTTT ACCAGTGATT TTATGACTGA ATATTCCACT
  AATTGTAAAA TACATTTTTA AAGAATCACG ATAAATCCCA GGTCACAGGA TCTGAAACTT
  CCGGTCAGTG GTAAGAAACC AATGACAGAA CTGTGAGAGC GGCGTCCTTA AGAGCAGCTG
  A
  GTAAAACACC CCGCTGCTCC GCTCCCTCCC GTTTCCCAGC CCCGCAGCTC CTCTAACCTG
  GGACCTTTCG GGGCCGCCGG GCTGCTGTGC CGACAGTTGC GCTGCCGACT GCCGCCTCTC
  CCAGGCCCTC TGCCACGGAA ATGCTTCTGA GGAGACTTTT CCGGGTCCAG AAACAGCTAG
  GACGCAGAAA CCGAAAGGTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145304085	ENSMUSSNP2835118	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49392236					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533670 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	233 bp upstream
Rr392409	regulatory region 392409	1876 bp downstream
Rr523017	regulatory region 523017	within coordinates
Rr523018	regulatory region 523018	138 bp proximal
Tssr146602	transcription start site region 146602	105 bp downstream
Tssr146603	transcription start site region 146603	125 bp downstream