rs49393685 SNP Detail

Summary

• ID
  rs49393685
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGCTCTGC TGTGTGTGAC AGTTAGAACA CTAATATGTC
  TCCAAATTCT GGCTCCCCAA AGGGACAACT GGGAGAATCT TGGGTCCTGG AGTCCATGCT
  T
  TGGTCTGCAA TAACCTCCTT TTTTTTCATG TGGCCTGGTA CTGCTTGCCC TGTAGTTTCC
  AAGAGACAGA TGAGCTAACA CGTAAAACAT AAAAAGAGT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145548337	ENSMUSSNP1995432	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49393685					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777461 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1861 bp distal
Rr12645	regulatory region 12645	940 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1983 bp downstream
Tssr226	transcription start site region 226	1713 bp upstream
Tssr227	transcription start site region 227	278 bp upstream
Tssr9015	transcription start site region 9015	1987 bp downstream
Tssr9016	transcription start site region 9016	1735 bp downstream
Tssr9017	transcription start site region 9017	1697 bp downstream
Tssr9018	transcription start site region 9018	1679 bp downstream
Tssr9019	transcription start site region 9019	1646 bp downstream
Tssr9020	transcription start site region 9020	875 bp downstream
Tssr9021	transcription start site region 9021	855 bp downstream
Tssr9022	transcription start site region 9022	367 bp downstream
Tssr9023	transcription start site region 9023	293 bp downstream
Tssr9024	transcription start site region 9024	257 bp downstream
Tssr9025	transcription start site region 9025	22 bp upstream
Tssr9026	transcription start site region 9026	224 bp upstream
Tssr9027	transcription start site region 9027	334 bp upstream
Tssr9028	transcription start site region 9028	374 bp upstream
Tssr9029	transcription start site region 9029	954 bp upstream
Tssr9030	transcription start site region 9030	989 bp upstream
Tssr9031	transcription start site region 9031	1048 bp upstream
Tssr9032	transcription start site region 9032	1631 bp upstream
Tssr13890	transcription start site region 13890	1948 bp upstream
Tssr13891	transcription start site region 13891	1703 bp upstream
Tssr13892	transcription start site region 13892	1636 bp upstream
Tssr13893	transcription start site region 13893	1619 bp upstream
Tssr13894	transcription start site region 13894	870 bp upstream
Tssr13895	transcription start site region 13895	826 bp upstream
Tssr13896	transcription start site region 13896	299 bp upstream
Tssr13897	transcription start site region 13897	271 bp upstream
Tssr13898	transcription start site region 13898	1014 bp downstream
Tssr13899	transcription start site region 13899	1082 bp downstream
Tssr13900	transcription start site region 13900	1092 bp downstream
Tssr13901	transcription start site region 13901	1653 bp downstream