rs49394070 SNP Detail

Summary

• ID
  rs49394070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50409390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGTTAT TTCCCAGACA
  CAGAGCTATG GTGAGCACCA AGAGGAAACT TAAAAAAATA AAAGTGTAGC AGTCAGAGAT
  GTGGCTTAGT TAGTAGAACG CTTGCCTGAC ACATACCTCG TTCTGGGTTC ACTGTTCTAC
  ATTTTATAAA GCAGGTGTGG CAGCATACAC CTGCAGTGTC TATACACAAG AAGGAGAGTC
  R
  GGAGTTCAAG GACAGCCTCG GTTACGTTTG AATCCAGCTT AGGATGAGAT CCTGTTTCGA
  AATACACAAA TTGTGTACAG TAGCCACTGA GCAAGAAGAA GCCAGAGCGA AGAAGTGACC
  AGTCTTGCCC CTAAGTACCA GAGCTGGGAT GCAGATCCAG GACTGTCTGA CCTGCTACTG
  GATCCACTTG CTTTGCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136476493	ENSMUSSNP3546140	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49394070					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50409390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21724	CpG island 21724	808 bp proximal
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678655	regulatory region 678655	1673 bp distal
Rr678656	regulatory region 678656	1130 bp distal
Tssr85026	transcription start site region 85026	1289 bp downstream
Tssr85027	transcription start site region 85027	1054 bp upstream
Tssr85028	transcription start site region 85028	1084 bp upstream
Tssr85029	transcription start site region 85029	1119 bp upstream
Tssr85030	transcription start site region 85030	1164 bp upstream