rs49394477 SNP Detail

Summary

• ID
  rs49394477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45511193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAGCTAG CCAGACCCGA
  GTATTTAATG AGCTGGTGTT GACTTTTTGA TTTCTTGTTC TTGGTGGAGA ACTGTGAGCT
  GCCTCAGCTA ATTAGGAGTC TCTGCTCAAA AAGCATCCCG CTTTCTGTCC TTCGAAAAGA
  CCAGGAACTC ATCCCCACTC CTTGGGGACC CCTTCTCCTG TCCCCTTGAA CTTCTGACTT
  R
  CCTTGAGAGT CTTGTTCGCT TGCAAAAATG TGCCTCTTCC AGGAAGGCTA CCTGGATTCA
  CCTGCTTGCT TCCAACTGTC CCTTTTCTAT GAAATCAAAA GTGCCCTTGA GTCTTTTTAT
  AGGACACCTA CAATTATCAA TGGAATGTCA GAACACCTGT CCCCTGTTTG CAGCCACAGA
  GCCACCAGAG CGGAAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136415377	ENSMUSSNP3975725	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49394477					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45511193 () rs orientation: forward

Symbol	Name	Function Class
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr195123	regulatory region 195123	1408 bp proximal
Rr200398	regulatory region 200398	393 bp distal
Rr200399	regulatory region 200399	808 bp proximal
Rr203915	regulatory region 203915	1477 bp distal