rs49395166 SNP Detail

Summary

• ID
  rs49395166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77193617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGCTTGCA TGTCAGATTA AATCTTTGAG TACAAGAAAA
  CAGAATACTT AATAGAAAAA AAAACATTGG GTTTATAAAA CTAGTAGTAT TTAAAAGAGA
  R
  GGTAGAAGAA CTAAAAATAC ATCAATTATG AAACAGTGTT GGTAAAACAG ACACACTTAG
  GCCTTTAGGG GGCAGGAGAA GACTATAAAT AACCAAGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss144698262	ENSMUSSNP3960835	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss324446862	CHEV_13_77184759	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49395166					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77193617 () rs orientation: forward

Symbol	Name	Function Class
Rr273760	regulatory region 273760	within coordinates
Rr277223	regulatory region 277223	1417 bp distal
Rr281681	regulatory region 281681	1183 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr123272	transcription start site region 123272	1907 bp downstream