rs49395467 SNP Detail

Summary

• ID
  rs49395467
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26756216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCCCATGA CCACAGCTAA GAGTCTGAAC ACTTGATCCC
  AAATCAGTGG GCTGGGCTAC CACCCCCCAC CCCCAGGCCT TCCTCATGCT CAGAGAAGAG
  S
  GACAAGAAAA ATTTTACAGA ATTGCTAGGA TCTGGGACAG AACTTCCACT CACCCCCGCC
  CCCCCCCAAG AGTGGCATTA TTCGAATGGG CAGAACCTTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60554808	NES16569671	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49395467					SNP	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554808	NES16569671	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26756216 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	878 bp downstream
Gm50275	predicted gene, 50275	within coordinates
Gm64855	predicted gene, 64855	1483 bp downstream
Rr405114	regulatory region 405114	808 bp upstream
Tssr5048	transcription start site region 5048	1885 bp downstream
Tssr5049	transcription start site region 5049	1834 bp upstream
Tssr5050	transcription start site region 5050	1406 bp downstream
Tssr143246	transcription start site region 143246	1088 bp upstream