rs49395625 SNP Detail

Summary

• ID
  rs49395625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88903615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG ACATATGCAC TCTGATGTAG
  R
  GGCTAAGGTC AGAGGACAAC TTATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132549963	ENSMUSSNP3308687	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323783789	CHEV_11_88874103	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49395625					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88903615 () rs orientation: forward

Symbol	Name	Function Class
Rr454280	regulatory region 454280	207 bp distal
Trim25	tripartite motif-containing 25	within coordinates
Tssr104066	transcription start site region 104066	1880 bp downstream
Tssr104067	transcription start site region 104067	1812 bp downstream