rs49395977 SNP Detail

Summary

• ID
  rs49395977
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25607930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTAAGTA CACTGTAGCT
  GTCTCAAAAA CCATGCGGTT GCTGGGAAAT GAACTCAGGA TGTCTGAAAG AGCAGCTAGT
  GCTTTTAACC ACTGAGCCAT CTCTCCAGCC TTGACCTCTT TTTTTTTTCT TTTTTCTTTT
  TTGCCTTAAG CTGAGGTCTA CAGCATGCTA AGTGTGTGCC TGCCACTCTG CTCACACTTC
  W
  TACTGGAGGT TTTGTCAAGG TCCTAGGAGG GTCACTGGAT TAGGATTCAG AAAATATACC
  GAGACATTCT ATGAGCTCAT TATCTCCCTG ATTTAAAAAA AAAGGAGGAA TGGACCAGCT
  GTCTGCCACA GGCCCCACCC AGGCTGACAC CCATTGTGAG AGTCAGGGCT GTTCCCATAG
  ACAGATACAC TGACAGCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60584254	NES16331452	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49395977					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60584254	NES16331452	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25607930 () rs orientation: forward

Symbol	Name	Function Class
Gm63710	predicted gene, 63710	within coordinates
Rr400801	regulatory region 400801	39 bp upstream
Rr400802	regulatory region 400802	1198 bp upstream
Rr400803	regulatory region 400803	1537 bp upstream
Tssr76672	transcription start site region 76672	326 bp upstream
Tssr80688	transcription start site region 80688	1165 bp downstream