rs49396394 SNP Detail

Summary

• ID
  rs49396394
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44436409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC ACTTGAACTG CTCCTAACAA
  C
  ATCCTTTGGT AGTCCAATAG CAGCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136396588	ENSMUSSNP6019046	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322941032	CHEV_9_44333195	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49396394					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44436409 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr200337	regulatory region 200337	1809 bp distal
Rr203858	regulatory region 203858	194 bp distal
Rr206318	regulatory region 206318	591 bp proximal
Rr401337	regulatory region 401337	1378 bp upstream
Tssr89167	transcription start site region 89167	856 bp downstream
Tssr89168	transcription start site region 89168	1285 bp downstream
Tssr89169	transcription start site region 89169	1312 bp downstream
Tssr89170	transcription start site region 89170	1357 bp downstream
Tssr89171	transcription start site region 89171	1392 bp downstream