rs49396940 SNP Detail

Summary

• ID
  rs49396940
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137638895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC AGCTCAGGTG TCTGCAGATC
  G
  GGAACGTAAG CCAGGGGAGA GATCT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147625430	ENSMUSSNP1805751	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321368866	CHEV_4_137467499	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49396940					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137638895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15141	CpG island 15141	1711 bp proximal
Ece1	endothelin converting enzyme 1	within coordinates
Tssr39791	transcription start site region 39791	1903 bp upstream
Tssr39792	transcription start site region 39792	1963 bp upstream