rs49397415 SNP Detail

Summary

• ID
  rs49397415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCCACC TCCCAAATGC
  ATGCCAGCTT CTTCTTTTTT AAAAAGATTT ATTTTATGTA TGAGTACACT GTATCTGTCT
  TCAGACACAC CAGAAGAGGG CATCAGATCC CAATACAGAT GGTTGTGAGC CACCATGTGG
  TTGCTGGGAA TTGAACTCAA GACCTCTGGA AGAGCAGTCA GTGCTCTTAA CCACTGAGCC
  R
  TCTCTCCACC CCAACACACC AGCTTCTAAA ACCATCTTTT CTTGTCTCAG ATCTTTACAT
  GCAACAAATG CCCATTAGTA TTGCATTAAG CTTGGTTTGT CACAGAATTA ACATTGTGGC
  CTTGAAAGGT CACCACACAG AATTAGACAG TGTCAGCCCA GTTCACAATT ATCTATTGTC
  TACTATTATA ATTATTATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147541499	ENSMUSSNP118725	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321351216	CHEV_4_134773823	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49397415					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945219 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	19 bp distal
Rr86244	regulatory region 86244	1582 bp proximal
Tssr43955	transcription start site region 43955	1512 bp upstream
Tssr43956	transcription start site region 43956	1481 bp upstream
Tssr43957	transcription start site region 43957	1231 bp upstream
Tssr43958	transcription start site region 43958	1095 bp upstream
Tssr43959	transcription start site region 43959	1074 bp upstream
Tssr43960	transcription start site region 43960	922 bp upstream
Tssr43961	transcription start site region 43961	863 bp upstream
Tssr43962	transcription start site region 43962	817 bp upstream
Tssr43963	transcription start site region 43963	758 bp upstream
Tssr43964	transcription start site region 43964	646 bp upstream
Tssr43965	transcription start site region 43965	704 bp downstream