rs49397522 SNP Detail

Summary

• ID
  rs49397522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62722849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTGACTC GCACGAGTCA
  TCACCAAGCA TCGCGGCGTG CAAAGTCCTA GCCCGATCGA GATCCGCCCC CCAGCTCCGT
  CCCGCCACGG AGTAGTACCC TCTCCCAACT CCCCGGCTCT TTGCTGCCGC CCCAGCTCAC
  CCTAAACTGC CTCTGGATCC CAGGGCAGCG CGGGTCACCC CTGCTAGAAG CCTGCACCAA
  Y
  CCTTGGACAA ACTTTCCAGC GGGTCTTGGT CCGTGCAACT TTGGAGCCTG AGGCTCCGGC
  ACGCGCCAAG GAGTTCAGGC GGGCCTAGGA TGGACACTTA CCATCCGGCA CGGTCAGGGC
  CCGAGCACCC GGGTTGGGGA GCTGCTCCGC GAATGTTCCC GTAGAAGAGG CAGGTAGAGG
  TACATGACCA GGGAGGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52348685	NES15281830	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49397522					SNP	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348685	NES15281830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62722849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	within coordinates
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Tet1	tet methylcytosine dioxygenase 1	within coordinates
Tssr93732	transcription start site region 93732	1398 bp downstream
Tssr97890	transcription start site region 97890	342 bp downstream
Tssr97891	transcription start site region 97891	391 bp downstream